2013

Identifying recent adaptations in large-scale genomic data
Grossman SR, Andersen KG, Shlyakhter I, Tabrizi S, Winnicki S, Yen A, Park DJ, Griesemer D, Karlsson EK, Wong SH, Cabili M, Adegbola RA, Bamezai RN, Hill AV, Vannberg FO, Rinn JL; 1000 Genomes Project, Lander ES, Schaffner SF, Sabeti PC
Cell. 2013 Feb 14;152(4):703-13

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2012

Effect of HIV-2 infection on HIV-1 disease progression
Vannberg FO, McDermid JM, Jaye A; MRC Gambia HIV Clinical Cohort Study; Wellcome Trust Case Control Consortium 3
N Engl J Med. 2012 Nov 15;367(20):1962; author reply 1962-3. doi: 10.1056/NEJMc1210334#SA3

PTX3 Genetic Variation and Dizygotic Twinning in The Gambia: Could Pleiotropy with Innate Immunity Explain Common Dizygotic Twinning in Africa?
Sirugo G, Edwards DR, Ryckman KK, Bisseye C, White MJ, Kebbeh B, Morris GA, Adegbola RA, Tacconelli A, Predazzi IM, Novelli G, Vannberg FO, Odunsi K, Page GP, Williams SM
Ann Hum Genet. 2012 Nov;76(6):454-463. doi: 10.1111/j.1469-1809.2012.00723.x. Epub 2012 Jul 27

Genetics of gene expression in primary immune cells identifies cell type-specific master regulators and roles of HLA alleles
Fairfax BP, Makino S, Radhakrishnan J, Plant K, Leslie S, Dilthey A, Ellis P, Langford C, Vannberg FO, Knight JC
Nat Genet. 2012 Mar 25;44(5):502-10. doi: 10.1038/ng.2205

Common variants at 11p13 are associated with susceptibility to tuberculosis
Thye T, Owusu-Dabo E, Vannberg FO, van Crevel R, Curtis J, Sahiratmadja E, Balabanova Y, Ehmen C, Muntau B, Ruge G, Sievertsen J, Gyapong J, Nikolayevskyy V, Hill PC, Sirugo G, Drobniewski F, van de Vosse E, Newport M, Alisjahbana B, Nejentsev S, Ottenhoff TH, Hill AV, Horstmann RD, Meyer CG
Nat Genet. 2012 Feb 5;44(3):257-9. doi: 10.1038/ng.1080

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2011

Human genetic susceptibility to intracellular pathogens
Vannberg FO, Chapman SJ, Hill AV
Immunol Rev. 2011 Mar;240(1):105-16. doi: 10.1111/j.1600-065X.2010.00996.x. Review

A common haplotype of the TNF receptor 2 gene modulates endotoxin tolerance
Fairfax BP, Davenport EE, Makino S, Hill AV, Vannberg FO, Knight JC
J Immunol. 2011 Mar 1;186(5):3058-65. Epub 2011 Jan 31

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2010

Common NFKBIL2 polymorphisms and susceptibility to pneumococcal disease: a genetic association study
Chapman SJ, Khor CC, Vannberg FO, Rautanen A, Walley A, Segal S, Moore CE, Davies RJ, Day NP, Peshu N, Crook DW, Berkley JA, Williams TN, Scott JA, Hill AV
Crit Care. 2010;14(6):R227. Epub 2010 Dec 20

A naturally occurring variant in human TLR9, P99L, is associated with loss of CpG oligonucleotide responsiveness
Kubarenko AV, Ranjan S, Rautanen A, Mills TC, Wong S, Vannberg F, Neumaier M, Bekeredjian-Ding I, Hill AV, Ahmad-Nejad P, Weber AN
J Biol Chem. 2010 Nov 19;285(47):36486-94. Epub 2010 Sep 14

Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2
Thye T, Vannberg FO, Wong SH, Owusu-Dabo E, Osei I, Gyapong J, Sirugo G, Sisay-Joof F, Enimil A, Chinbuah MA, Floyd S, Warndorff DK, Sichali L, Malema S, Crampin AC, Ngwira B, Teo YY, Small K, Rockett K, Kwiatkowski D, Fine PE, Hill PC, Newport M, Lienhardt C, Adegbola RA, Corrah T, Ziegler A; African TB Genetics Consortium; Wellcome Trust Case Control Consortium, Morris AP, Meyer CG, Horstmann RD, Hill AV
Nat Genet. 2010 Sep;42(9):739-41. Epub 2010 Aug 8. Erratum in: Nat Genet. 2011 Oct;43(10):1040

Leprosy and the adaptation of human toll-like receptor 1
Wong SH, Gochhait S, Malhotra D, Pettersson FH, Teo YY, Khor CC, Rautanen A, Chapman SJ, Mills TC, Srivastava A, Rudko A, Freidin MB, Puzyrev VP, Ali S, Aggarwal S, Chopra R, Reddy BS, Garg VK, Roy S, Meisner S, Hazra SK, Saha B, Floyd S, Keating BJ, Kim C, Fairfax BP, Knight JC, Hill PC, Adegbola RA, Hakonarson H, Fine PE, Pitchappan RM, Bamezai RN, Hill AV, Vannberg FO
PLoS Pathog. 2010 Jul 1;6:e1000979

CISH and susceptibility to infectious diseases
Khor CC, Vannberg FO, Chapman SJ, Guo H, Wong SH, Walley AJ, Vukcevic D, Rautanen A, Mills TC, Chang KC, Kam KM, Crampin AC, Ngwira B, Leung CC, Tam CM, Chan CY, Sung JJ, Yew WW, Toh KY, Tay SK, Kwiatkowski D, Lienhardt C, Hien TT, Day NP, Peshu N, Marsh K, Maitland K, Scott JA, Williams TN, Berkley JA, Floyd S, Tang NL, Fine PE, Goh DL, Hill AV
N Engl J Med. 2010 Jun 3;362(22):2092-101. Epub 2010 May 19

Genomewide association study of leprosy
Wong SH, Hill AV, Vannberg FO; India-Africa-United Kingdom Leprosy Genetics Consortium
N Engl J Med. 2010 Apr 15;362(15):1446-7; author reply 1447-8. No abstract available

Comment on "CRTAM confers late-stage activation of CD8+ T cells to regulate retention within lymph node"
Wong SH, Vannberg FO, Spencer AJ, van der Weyden L, Hill AV, Wyllie DH
J Immunol. 2010 Apr 15;184(8):4052-3

Mannose-binding lectin genotypes: lack of association with susceptibility to thoracic empyema
Chapman SJ, Vannberg FO, Khor CC, Rautanen A, Maskell NA, Davies CW, Moore CE, Day NP, Crook DW, Davies RJ, Hill AV
BMC Med Genet. 2010 Jan 15;11:5

An integrated expression phenotype mapping approach defines common variants in LEP, ALOX15 and CAPNS1 associated with induction of IL-6
Fairfax BP, Vannberg FO, Radhakrishnan J, Hakonarson H, Keating BJ, Hill AV, Knight JC
Hum Mol Genet. 2010 Feb 15;19(4):720-30. Epub 2009 Nov 26

NFKBIZ polymorphisms and susceptibility to pneumococcal disease in European and African populations
Chapman SJ, Khor CC, Vannberg FO, Rautanen A, Segal S, Moore CE, Davies RJ, Day NP, Peshu N, Crook DW, Berkley JA, Williams TN, Scott JA, Hill AV
Genes Immun. 2010 Jun;11(4):319-25. Epub 2009 Oct 1

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2008

CD209 genetic polymorphism and tuberculosis disease
Vannberg FO, Chapman SJ, Khor CC, Tosh K, Floyd S, Jackson-Sillah D, Crampin A, Sichali L, Bah B, Gustafson P, Aaby P, McAdam KP, Bah-Sow O, Lienhardt C, Sirugo G, Fine P, Hill AV
PLoS One. 2008 Jan 2;3(1):e1388

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2007

Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants
Wellcome Trust Case Control Consortium; Australo-Anglo-American Spondylitis Consortium (TASC), Burton PR, Clayton DG, Cardon LR, Craddock N, Deloukas P, Duncanson A, Kwiatkowski DP, McCarthy MI, Ouwehand WH, Samani NJ, Todd JA, Donnelly P, Barrett JC, Davison D, Easton D, Evans DM, Leung HT, Marchini JL, Morris AP, Spencer CC, Tobin MD, Attwood AP, Boorman JP, Cant B, Everson U, Hussey JM, Jolley JD, Knight AS, Koch K, Meech E, Nutland S, Prowse CV, Stevens HE, Taylor NC, Walters GR, Walker NM, Watkins NA, Winzer T, Jones RW, McArdle WL, Ring SM, Strachan DP, Pembrey M, Breen G, St Clair D, Caesar S, Gordon-Smith K, Jones L, Fraser C, Green EK, Grozeva D, Hamshere ML, Holmans PA, Jones IR, Kirov G, Moskivina V, Nikolov I, O'Donovan MC, Owen MJ, Collier DA, Elkin A, Farmer A, Williamson R, McGuffin P, Young AH, Ferrier IN, Ball SG, Balmforth AJ, Barrett JH, Bishop TD, Iles MM, Maqbool A, Yuldasheva N, Hall AS, Braund PS, Dixon RJ, Mangino M, Stevens S, Thompson JR, Bredin F, Tremelling M, Parkes M, Drummond H, Lees CW, Nimmo ER, Satsangi J, Fisher SA, Forbes A, Lewis CM, Onnie CM, Prescott NJ, Sanderson J, Matthew CG, Barbour J, Mohiuddin MK, Todhunter CE, Mansfield JC, Ahmad T, Cummings FR, Jewell DP, Webster J, Brown MJ, Lathrop MG, Connell J, Dominiczak A, Marcano CA, Burke B, Dobson R, Gungadoo J, Lee KL, Munroe PB, Newhouse SJ, Onipinla A, Wallace C, Xue M, Caulfield M, Farrall M, Barton A; Biologics in RA Genetics and Genomics Study Syndicate (BRAGGS) Steering Committee, Bruce IN, Donovan H, Eyre S, Gilbert PD, Hilder SL, Hinks AM, John SL, Potter C, Silman AJ, Symmons DP, Thomson W, Worthington J, Dunger DB, Widmer B, Frayling TM, Freathy RM, Lango H, Perry JR, Shields BM, Weedon MN, Hattersley AT, Hitman GA, Walker M, Elliott KS, Groves CJ, Lindgren CM, Rayner NW, Timpson NJ, Zeggini E, Newport M, Sirugo G, Lyons E, Vannberg F, Hill AV, Bradbury LA, Farrar C, Pointon JJ, Wordsworth P, Brown MA, Franklyn JA, Heward JM, Simmonds MJ, Gough SC, Seal S; Breast Cancer Susceptibility Collaboration (UK), Stratton MR, Rahman N, Ban M, Goris A, Sawcer SJ, Compston A, Conway D, Jallow M, Newport M, Sirugo G, Rockett KA, Bumpstead SJ, Chaney A, Downes K, Ghori MJ, Gwilliam R, Hunt SE, Inouye M, Keniry A, King E, McGinnis R, Potter S, Ravindrarajah R, Whittaker P, Widden C, Withers D, Cardin NJ, Davison D, Ferreira T, Pereira-Gale J, Hallgrimsdo'ttir IB, Howie BN, Su Z, Teo YY, Vukcevic D, Bentley D, Brown MA, Compston A, Farrall M, Hall AS, Hattersley AT, Hill AV, Parkes M, Pembrey M, Stratton MR, Mitchell SL, Newby PR, Brand OJ, Carr-Smith J, Pearce SH, McGinnis R, Keniry A, Deloukas P, Reveille JD, Zhou X, Sims AM, Dowling A, Taylor J, Doan T, Davis JC, Savage L, Ward MM, Learch TL, Weisman MH, Brown M
Nat Genet. 2007 Nov;39(11):1329-37. Epub 2007 Oct 21

Positive replication and linkage disequilibrium mapping of the chromosome 21q22.1 malaria susceptibility locus
Khor CC, Vannberg FO, Chapman SJ, Walley A, Aucan C, Loke H, White NJ, Peto T, Khor LK, Kwiatkowski D, Day N, Scott A, Berkley JA, Marsh K, Peshu N, Maitland K, Williams TN, Hill AV
Genes Immun. 2007 Oct;8(7):570-6. Epub 2007 Aug 16

IkappaB genetic polymorphisms and invasive pneumococcal disease
Chapman SJ, Khor CC, Vannberg FO, Frodsham A, Walley A, Maskell NA, Davies CW, Segal S, Moore CE, Gillespie SH, Denny P, Day NP, Crook DW, Davies RJ, Hill AV
Am J Respir Crit Care Med. 2007 Jul 15;176(2):181-7. Epub 2007 Apr 26

Functional polymorphisms in the FCN2 gene are not associated with invasive pneumococcal disease
Chapman SJ, Vannberg FO, Khor CC, Segal S, Moore CE, Knox K, Day NP, Davies RJ, Crook DW, Hill AV
Mol Immunol. 2007 May;44(12):3267-70. Epub 2007 Mar 26

A Mal functional variant is associated with protection against invasive pneumococcal disease, bacteremia, malaria and tuberculosis
Khor CC, Chapman SJ, Vannberg FO, Dunne A, Murphy C, Ling EY, Frodsham AJ, Walley AJ, Kyrieleis O, Khan A, Aucan C, Segal S, Moore CE, Knox K, Campbell SJ, Lienhardt C, Scott A, Aaby P, Sow OY, Grignani RT, Sillah J, Sirugo G, Peshu N, Williams TN, Maitland K, Davies RJ, Kwiatkowski DP, Day NP, Yala D, Crook DW, Marsh K, Berkley JA, O'Neill LA, Hill AV
Nat Genet. 2007 Apr;39(4):523-8. Epub 2007 Feb 25

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2000-2006

PTPN22 and invasive bacterial disease
Chapman SJ, Khor CC, Vannberg FO, Maskell NA, Davies CW, Hedley EL, Segal S, Moore CE, Knox K, Day NP, Gillespie SH, Crook DW, Davies RJ, Hill AV
Nat Genet. 2006 May;38(5):499-500

Building a human kinase gene repository: bioinformatics, molecular cloning, and functional validation
Park J, Hu Y, Murthy TV, Vannberg F, Shen B, Rolfs A, Hutti JE, Cantley LC, Labaer J, Harlow E, Brizuela L
Proc Natl Acad Sci U S A. 2005 Jun 7;102(23):8114-9. Epub 2005 May 31

Human immunodeficiency virus type 1 subtype C molecular phylogeny: consensus sequence for an AIDS vaccine design?
Novitsky V, Smith UR, Gilbert P, McLane MF, Chigwedere P, Williamson C, Ndung'u T, Klein I, Chang SY, Peter T, Thior I, Foley BT, Gaolekwe S, Rybak N, Gaseitsiwe S, Vannberg F, Marlink R, Lee TH, Essex M
J Virol. 2002 Jun;76(11):5435-51

Identification of human immunodeficiency virus type 1 subtype C Gag-, Tat-, Rev-, and Nef-specific elispot-based cytotoxic T-lymphocyte responses for AIDS vaccine design
Novitsky V, Rybak N, McLane MF, Gilbert P, Chigwedere P, Klein I, Gaolekwe S, Chang SY, Peter T, Thior I, Ndung'u T, Vannberg F, Foley BT, Marlink R, Lee TH, Essex M
J Virol. 2001 Oct;75(19):9210-28

The molecular epidemiology of HIV type 1 of men in Mexico
Rivera-Morales LG, Novitsky VA, Trujillo JR, Lavalle-Montalvo C, Cano-Dominguez C, Ramos-Jimenez J, Jimenez-Rios E, Flores-Flores L, Lopez-Guillen P, Gilbert P, Vannberg F, Tamez-Guerra R, Rodriguez-Padilla C, Essex M
AIDS Res Hum Retroviruses. 2001 Jan 1;17(1):87-92

HIV type 1 A/J recombinant with a pronounced pol gene mosaicism
Novitsky VA, Gaolekwe S, McLane MF, Ndung'u TP, Foley BT, Vannberg F, Marlink R, Essex M
AIDS Res Hum Retroviruses. 2000 Jul 1;16(10):1015-20

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1997-1999

Emerging recombinant human immunodeficiency viruses: uneven representation of the envelope V3 region
Renjifo B, Gilbert P, Chaplin B, Vannberg F, Mwakagile D, Msamanga G, Hunter D, Fawzi W, Essex M
AIDS. 1999 Sep 10;13(13):1613-21

Molecular cloning and phylogenetic analysis of human immunodeficiency virus type 1 subtype C: a set of 23 full-length clones from Botswana
Novitsky VA, Montano MA, McLane MF, Renjifo B, Vannberg F, Foley BT, Ndung'u TP, Rahman M, Makhema MJ, Marlink R, Essex M
J Virol. 1999 May;73(5):4427-32

Identification of genes differentially expressed in Mycobacterium tuberculosis by differential display PCR
Rivera-Marrero CA, Burroughs MA, Masse RA, Vannberg FO, Leimbach DL, Roman J, Murtagh JJ Jr
Microb Pathog. 1998 Dec;25(6):307-16

Epidemic expansion of HIV type 1 subtype C and recombinant genotypes in Tanzania
Renjifo B, Chaplin B, Mwakagile D, Shah P, Vannberg F, Msamanga G, Hunter D, Fawzi W, Essex M
AIDS Res Hum Retroviruses. 1998 May 1;14(7):635-8

Detailed analysis of a 17q21 microdissection library by sequence bioinformatics and isolation of region-specific clones
Bentley KL, Li WL, VannBerg FO, Choi JY, Yu J, Kao FT, Ruaño G
Somat Cell Mol Genet. 1997 Sep;23(5):353-65

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